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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="add_taxa" name="add_taxa" version="1.2.0">
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2 <description>Add taxa to OTU table</description>
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3 <requirements>
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4 <requirement type="binary">add_taxa.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 add_taxa.py
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9 --otu_file=$otu_file
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10 --taxonomy_file=$taxonomy_file
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11 --output_file=$output_file
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12 --id_map_file=$id_map_file
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13 </command>
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14 <inputs>
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15 <param name="otu_file" type="data" format="txt" label="otu_file"
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16 help="Path to read otu file [REQUIRED]"/>
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17 <param name="taxonomy_file" type="data" format="txt" label="taxonomy_file"
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18 help="Path to read taxonomy file [REQUIRED]"/>
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19 <param name="id_map_file" type="data" format="tabular" label="id_map_file"
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20 help="Path to read seq id to otu map file [default: ('NO', 'DEFAULT')]"/>
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21 </inputs>
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22 <outputs>
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23 <data format="txt" name="output_file" label="${tool.name} on ${on_string}"/>
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24 </outputs>
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25 <tests>
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26 </tests>
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27 <help>
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28
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29 </help>
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30 </tool>
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