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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="collate_alpha" name="collate_alpha" version="1.2.0">
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2 <description>Collate alpha diversity results</description>
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3 <requirements>
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4 <requirement type="binary">collate_alpha.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 collate_alpha.py
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10 --input_path=$input_path
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11 --output_path=$output_path
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12 --example_path=$example_path
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13 </command>
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14 <inputs>
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15 <param name="input_path" type="text" label="input_path"
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16 help="input path (a directory) [REQUIRED]"/>
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17 <param name="example_path" type="text" label="example_path"
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18 help="example alpha_diversity analysis file, containing all samples and all metrics to be included in the collated result[Default: chosen automatically (see usage string)]"/>
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19 </inputs>
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20 <outputs>
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21 <data format="txt" name="output_path"/>
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22 </outputs>
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23 <tests>
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24 </tests>
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25 <help>
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26
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27 </help>
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28 </tool>
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