Mercurial > repos > jjohnson > qiime

diff collate_alpha.xml @ 0:e5c3175506b7 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/collate_alpha.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,29 @@
+<tool id="collate_alpha" name="collate_alpha" version="1.2.0">
+ <description>Collate alpha diversity results</description>
+ <requirements>
+  <requirement type="binary">collate_alpha.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  collate_alpha.py
+  --input_path=$input_path
+  --output_path=$output_path
+  --example_path=$example_path
+ </command>
+ <inputs>
+  <param name="input_path" type="text"  label="input_path"
+   help="input path (a directory) [REQUIRED]"/>
+  <param name="example_path" type="text"  label="example_path"
+   help="example alpha_diversity analysis file, containing all samples and all metrics to be included in the collated result[Default: chosen automatically (see usage string)]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_path"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+