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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="beta_significance" name="beta_significance" version="1.2.0">
2 <description>This script runs any of a set of common tests to determine if a sample is statistically significantly different from another sample</description>
3 <requirements>
4 <requirement type="binary">beta_significance.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 beta_significance.py
10 --input_path=$input_path
11 --output_path=$output_path
12 --significance_test=$significance_test
13 --tree_path=$tree_path
14 --num_iters=$num_iters
15 </command>
16 <inputs>
17 <param name="input_path" type="text" label="input_path"
18 help="input otu table [REQUIRED]"/>
19 <param name="significance_test" type="text" label="significance_test"
20 help="significance test to use, options are 'unweighted_unifrac', 'weighted_unifrac', or 'p-test' [REQUIRED]"/>
21 <param name="tree_path" type="text" label="tree_path"
22 help="path to newick tree file, required for phylogenetic metrics [default: %default]"/>
23 <param name="num_iters" type="integer" value="100" label="num_iters"
24 help="number of monte carlo randomizations [default: 100]"/>
25 </inputs>
26 <outputs>
27 <data format="txt" name="output_path"/>
28 </outputs>
29 <tests>
30 </tests>
31 <help>
32
33 </help>
34 </tool>
35