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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="beta_significance" name="beta_significance" version="1.2.0">
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2 <description>This script runs any of a set of common tests to determine if a sample is statistically significantly different from another sample</description>
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3 <requirements>
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4 <requirement type="binary">beta_significance.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 beta_significance.py
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10 --input_path=$input_path
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11 --output_path=$output_path
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12 --significance_test=$significance_test
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13 --tree_path=$tree_path
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14 --num_iters=$num_iters
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15 </command>
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16 <inputs>
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17 <param name="input_path" type="text" label="input_path"
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18 help="input otu table [REQUIRED]"/>
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19 <param name="significance_test" type="text" label="significance_test"
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20 help="significance test to use, options are 'unweighted_unifrac', 'weighted_unifrac', or 'p-test' [REQUIRED]"/>
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21 <param name="tree_path" type="text" label="tree_path"
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22 help="path to newick tree file, required for phylogenetic metrics [default: %default]"/>
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23 <param name="num_iters" type="integer" value="100" label="num_iters"
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24 help="number of monte carlo randomizations [default: 100]"/>
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25 </inputs>
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26 <outputs>
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27 <data format="txt" name="output_path"/>
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28 </outputs>
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29 <tests>
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30 </tests>
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31 <help>
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32
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33 </help>
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34 </tool>
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