diff beta_significance.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/beta_significance.xml	Sun Jul 17 10:30:11 2011 -0500
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+<tool id="beta_significance" name="beta_significance" version="1.2.0">
+ <description>This script runs any of a set of common tests to determine if a sample is statistically significantly different from another sample</description>
+ <requirements>
+  <requirement type="binary">beta_significance.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  beta_significance.py
+  --input_path=$input_path
+  --output_path=$output_path
+  --significance_test=$significance_test
+  --tree_path=$tree_path
+  --num_iters=$num_iters
+ </command>
+ <inputs>
+  <param name="input_path" type="text"  label="input_path"
+   help="input otu table [REQUIRED]"/>
+  <param name="significance_test" type="text"  label="significance_test"
+   help="significance test to use, options are 'unweighted_unifrac', 'weighted_unifrac', or 'p-test' [REQUIRED]"/>
+  <param name="tree_path" type="text"  label="tree_path"
+   help="path to newick tree file, required for phylogenetic metrics [default: %default]"/>
+  <param name="num_iters" type="integer" value="100" label="num_iters"
+   help="number of monte carlo randomizations [default: 100]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_path"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+