Mercurial > repos > jjohnson > qiime
diff beta_significance.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
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date | Sun, 17 Jul 2011 10:30:11 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/beta_significance.xml Sun Jul 17 10:30:11 2011 -0500 @@ -0,0 +1,35 @@ +<tool id="beta_significance" name="beta_significance" version="1.2.0"> + <description>This script runs any of a set of common tests to determine if a sample is statistically significantly different from another sample</description> + <requirements> + <requirement type="binary">beta_significance.py</requirement> + </requirements> + <command interpreter="python"> + qiime_wrapper.py + --galaxy_tmpdir='$__new_file_path__' + beta_significance.py + --input_path=$input_path + --output_path=$output_path + --significance_test=$significance_test + --tree_path=$tree_path + --num_iters=$num_iters + </command> + <inputs> + <param name="input_path" type="text" label="input_path" + help="input otu table [REQUIRED]"/> + <param name="significance_test" type="text" label="significance_test" + help="significance test to use, options are 'unweighted_unifrac', 'weighted_unifrac', or 'p-test' [REQUIRED]"/> + <param name="tree_path" type="text" label="tree_path" + help="path to newick tree file, required for phylogenetic metrics [default: %default]"/> + <param name="num_iters" type="integer" value="100" label="num_iters" + help="number of monte carlo randomizations [default: 100]"/> + </inputs> + <outputs> + <data format="txt" name="output_path"/> + </outputs> + <tests> + </tests> + <help> + + </help> +</tool> +