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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="consensus_tree" name="consensus_tree" version="1.2.0">
2 <description>This script outputs a majority consensus tree given a collection of input trees.</description>
3 <requirements>
4 <requirement type="binary">consensus_tree.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 consensus_tree.py
10 --input_dir=$input_dir
11 --output_fname=$output_fname
12 $strict
13 </command>
14 <inputs>
15 <param name="input_dir" type="text" label="input_dir"
16 help="input folder containing trees [REQUIRED]"/>
17 <param name="strict" type="boolean" truevalue="--strict" falsevalue="" checked="false" label="strict"
18 help="Use only nodes occurring }50% of the time [default: False]"/>
19 </inputs>
20 <outputs>
21 <data format="txt" name="output_fname"/>
22 </outputs>
23 <tests>
24 </tests>
25 <help>
26
27 </help>
28 </tool>
29