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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/consensus_tree.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,29 @@
+<tool id="consensus_tree" name="consensus_tree" version="1.2.0">
+ <description>This script outputs a majority consensus tree given a collection of input trees.</description>
+ <requirements>
+  <requirement type="binary">consensus_tree.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  consensus_tree.py
+  --input_dir=$input_dir
+  --output_fname=$output_fname
+  $strict
+ </command>
+ <inputs>
+  <param name="input_dir" type="text"  label="input_dir"
+   help="input folder containing trees [REQUIRED]"/>
+  <param name="strict" type="boolean" truevalue="--strict" falsevalue="" checked="false" label="strict"
+   help="Use only nodes occurring }50% of the time [default: False]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_fname"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+