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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="per_library_stats" name="per_library_stats" version="1.2.0">
2 <description>Calculate per library statistics</description>
3 <requirements>
4 <requirement type="binary">per_library_stats.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 per_library_stats.py
10 --otu_table_fp=$otu_table_fp
11 </command>
12 <inputs>
13 <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
14 help="path to the input OTU table (i.e., the output from make_otu_table.py) [REQUIRED]"/>
15 </inputs>
16 <outputs>
17
18 </outputs>
19 <tests>
20 </tests>
21 <help>
22
23 </help>
24 </tool>
25