Mercurial > repos > jjohnson > qiime

view per_library_stats.xml @ 0:e5c3175506b7 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
parents
children
line wrap: on
line source

<tool id="per_library_stats" name="per_library_stats" version="1.2.0">
 <description>Calculate per library statistics</description>
 <requirements>
  <requirement type="binary">per_library_stats.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  per_library_stats.py
  --otu_table_fp=$otu_table_fp
 </command>
 <inputs>
  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
   help="path to the input OTU table (i.e., the output from make_otu_table.py) [REQUIRED]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>