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diff convert_unifrac_sample_mapping_to_otu_table.xml @ 0:e5c3175506b7 default tip

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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/convert_unifrac_sample_mapping_to_otu_table.xml	Sun Jul 17 10:30:11 2011 -0500
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+<tool id="convert_unifrac_sample_mapping_to_otu_table" name="convert_unifrac_sample_mapping_to_otu_table" version="1.2.0">
+ <description>Convert a UniFrac sample mapping file to an OTU table</description>
+ <requirements>
+  <requirement type="binary">convert_unifrac_sample_mapping_to_otu_table.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  convert_unifrac_sample_mapping_to_otu_table.py
+  --sample_mapping_fp=$sample_mapping_fp
+  --output_fp=$output_fp
+ </command>
+ <inputs>
+  <param name="sample_mapping_fp" type="data" format="tabular" label="sample_mapping_fp"
+   help="path to the sample mapping file [REQUIRED]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_fp"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+