Mercurial > repos > john-mccallum > dnaclust
view fastaselect.xml @ 2:13656c2d7c73 draft
Uploaded fastaselect as sh
author | john-mccallum |
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date | Wed, 26 Jun 2013 22:41:02 -0400 |
parents | 8d31c21e4f28 |
children | 17a8f8670dc9 |
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<?xml version="1.0"?> <tool id="fastaselect_1" name="fastaselectclust"> <description>Get Fasta file of cluster centres from DNAclust output</description> <command>cat $inputClusterFile | fastaselect -c -f $inputFastaFile > $outputfile </command> <inputs> <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/> <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/> </inputs> <outputs> <data format="fasta" name="outputfile" /> </outputs> <help> This tool returns a fasta file containing a subset of sequences from an input mult-fasta file and a list of identifiers. It was developed as part of the DNACLUST package http://dnaclust.sourceforge.net/ for use in retrieving cluster centres but is handy for any extraction of a sequence subset from Galaxy tabular output </help> </tool>