Mercurial > repos > john-mccallum > dnaclust
annotate fastaselect.xml @ 2:13656c2d7c73 draft
Uploaded fastaselect as sh
| author | john-mccallum |
|---|---|
| date | Wed, 26 Jun 2013 22:41:02 -0400 |
| parents | 8d31c21e4f28 |
| children | 17a8f8670dc9 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool id="fastaselect_1" name="fastaselectclust"> | |
| 3 <description>Get Fasta file of cluster centres from DNAclust output</description> | |
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8d31c21e4f28
Uploaded fastaselect.xml with trivial but critical fix
john-mccallum
parents:
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changeset
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4 <command>cat $inputClusterFile | fastaselect -c -f $inputFastaFile > $outputfile </command> |
| 0 | 5 <inputs> |
| 6 <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/> | |
| 7 <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/> | |
| 8 | |
| 9 | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 | |
| 13 <data format="fasta" name="outputfile" /> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 | |
| 18 This tool returns a fasta file containing a subset of sequences from an input mult-fasta file and a list of identifiers. | |
| 19 | |
| 20 It was developed as part of the DNACLUST package http://dnaclust.sourceforge.net/ for use in retrieving cluster centres but is handy for any extraction of a sequence subset from Galaxy tabular output | |
| 21 | |
| 22 </help> | |
| 23 </tool> | |
| 24 |