Mercurial > repos > jose_duarte > phagedpo
changeset 42:e3d2637686a0 draft
Uploaded
author | jose_duarte |
---|---|
date | Thu, 21 Nov 2024 14:43:41 +0000 |
parents | ddd9e3b58525 |
children | ff949d77ed98 |
files | PhageDPO.xml |
diffstat | 1 files changed, 35 insertions(+), 53 deletions(-) [+] |
line wrap: on
line diff
--- a/PhageDPO.xml Fri Feb 02 16:28:15 2024 +0000 +++ b/PhageDPO.xml Thu Nov 21 14:43:41 2024 +0000 @@ -1,53 +1,35 @@ -<tool id="PhageDPO" name="PhageDPO" version="0.1.0" python_template_version="3.5"> - <description> -Phage Depolymerase Finder - </description> - <requirements> - <requirement type="package" version="1.78">biopython</requirement> - <requirement type="package" version="0.24.1">scikit-learn</requirement> - <requirement type="package" version="1.19.2">numpy</requirement> - <requirement type="package" version="1.2.3">pandas</requirement> - </requirements> - <command detect_errors="exit_code"><![CDATA[ - python '$__tool_directory__/DPOGALAXY.py' '${input1}' - ]]></command> - <inputs> - <param type="data" name="input1" format="fasta" label="Fasta file"/> - </inputs> - <outputs> - <data name="output1" format="html" from_work_dir="output.html" - label="DPO Prediction"/> - </outputs> - <tests> - <test> - <param name="input1" value="fasta_file.fasta"/> - <output name="output1" file="output.html"/> - </test> - </tests> - <help><![CDATA[ - -======== -PhageDPO -======== - -Predicts the existance of Phage Polysaccharide Depolymerase. - -PhageDPO is a python script that predicts the existance of depolymerases (DPOs) using supervised machine learning models. - -**Inputs:** - -* fasta file: fasta file format contain the nucleotide sequences. - -**Outputs:** - -The tool outputs an html file containing the name of the sequence and the percentage of positive prediction for DPO. - -**Requirements:** - -* Biopython -* Sklearn -* Numpy -* Pandas - - ]]></help> -</tool> \ No newline at end of file +<help><![CDATA[ + +======== +PhageDPO +======== + +Predicts the existence of Phage Polysaccharide Depolymerase. + +PhageDPO is a python script that predicts the existence of depolymerases (DPOs) using supervised machine learning models. + +**Inputs:** + +* fasta file: fasta file format containing the nucleotide sequences. + +**Outputs:** + +The tool outputs an html file containing the name of the sequence and the percentage of positive prediction for DPO. + +**Requirements:** + +* Biopython +* Sklearn +* Numpy +* Pandas + +--- + +### Send Feedback + +If you have feedback or suggestions, please feel free to email us by clicking the button below: + +<!-- Create a button linking to the email --> +<a href="mailto:mfernandasvieira@ceb.uminho.pt?subject=PhageDPO%20Feedback" style="padding:10px; background-color:#4CAF50; color:white; text-decoration:none; border-radius:5px;">Send Feedback</a> + +]]></help>