Mercurial > repos > koen > gbsx
diff tool_dependencies.xml @ 22:062399f3787f draft
new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest
| author | koen |
|---|---|
| date | Tue, 26 Jan 2016 07:38:36 -0500 |
| parents | efd8c94168d4 |
| children | 3b325560887b |
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--- a/tool_dependencies.xml Wed Jan 13 11:47:58 2016 -0500 +++ b/tool_dependencies.xml Tue Jan 26 07:38:36 2016 -0500 @@ -1,10 +1,12 @@ <?xml version="1.0"?> <tool_dependency> - <package name="GBSX" version="1.1.5"> + <package name="GBSX" version="1.2"> <install version="1.0"> <actions> - <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.1.5/GBSX_v1.1.5.jar</action> - <action type="move_file" rename_to="GBSX.jar"><source>GBSX_v1.1.5.jar</source><destination>$INSTALL_DIR</destination></action> + <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.2/GBSX_v1.2.jar</action> + <action type="move_file" rename_to="GBSX.jar"><source>GBSX_v1.2.jar</source><destination>$INSTALL_DIR</destination></action> + <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.2/GBSX_digest_v1.1.pl</action> + <action type="move_file" rename_to="GBSX_digest.pl"><source>GBSX_digest_v1.1.pl</source><destination>$INSTALL_DIR</destination></action> <action type="set_environment"> <environment_variable name="GBSX_PATH" action="set_to">$INSTALL_DIR</environment_variable> </action> @@ -12,4 +14,7 @@ </install> <readme>Installs the GBSX jar.</readme> </package> + <package name="bioperl" version="1.6.922"> + <repository name="package_bioperl_1_6" changeset_revision="0:5ef71da82044" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu/" /> + </package> </tool_dependency>