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view tool_dependencies.xml @ 22:062399f3787f draft

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new version of gbsx: v1.2 with barcodeGenerator, demultiplex and digest
author koen
date Tue, 26 Jan 2016 07:38:36 -0500
parents efd8c94168d4
children 3b325560887b
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<?xml version="1.0"?>
<tool_dependency>
    <package name="GBSX" version="1.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.2/GBSX_v1.2.jar</action>
                <action type="move_file" rename_to="GBSX.jar"><source>GBSX_v1.2.jar</source><destination>$INSTALL_DIR</destination></action>
                <action type="download_by_url">https://github.com/GenomicsCoreLeuven/GBSX/releases/download/v1.2/GBSX_digest_v1.1.pl</action>
                <action type="move_file" rename_to="GBSX_digest.pl"><source>GBSX_digest_v1.1.pl</source><destination>$INSTALL_DIR</destination></action>
                <action type="set_environment">
                    <environment_variable name="GBSX_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Installs the GBSX jar.</readme>
    </package>
    <package name="bioperl" version="1.6.922">
      <repository name="package_bioperl_1_6" changeset_revision="0:5ef71da82044" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu/" />
    </package>
</tool_dependency>