Mercurial > repos > kyost > atac_primer_tool
comparison concatenate_ordered.bash @ 0:fd3ea97a96bc draft
planemo upload commit 103cb51ec368438642504c3f98b76c363db478bb
| author | kyost |
|---|---|
| date | Sat, 28 Apr 2018 15:07:26 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:fd3ea97a96bc |
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| 1 #!/bin/bash | |
| 2 | |
| 3 input1=$1 | |
| 4 output1=$2 | |
| 5 | |
| 6 echo $input1 |tr , '\n' > input_series | |
| 7 | |
| 8 cat input_series | while read file | |
| 9 do | |
| 10 cat $file >> count_list | |
| 11 done | |
| 12 | |
| 13 sort -k1 count_list > sorted_list | |
| 14 cut -f 2 sorted_list > $output1 | |
| 15 | |
| 16 rm input_series | |
| 17 rm count_list | |
| 18 rm sorted_list |