Mercurial > repos > kyost > atac_primer_tool

annotate concatenate_ordered.bash @ 0:fd3ea97a96bc draft

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planemo upload commit 103cb51ec368438642504c3f98b76c363db478bb
author kyost
date Sat, 28 Apr 2018 15:07:26 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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fd3ea97a96bc planemo upload commit 103cb51ec368438642504c3f98b76c363db478bb
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1 #!/bin/bash
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2
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3 input1=$1
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4 output1=$2
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5
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6 echo $input1 |tr , '\n' > input_series
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7
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8 cat input_series | while read file
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9 do
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10 cat $file >> count_list
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11 done
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12
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13 sort -k1 count_list > sorted_list
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14 cut -f 2 sorted_list > $output1
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15
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16 rm input_series
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17 rm count_list
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18 rm sorted_list