view concatenate_ordered.bash @ 0:fd3ea97a96bc draft

planemo upload commit 103cb51ec368438642504c3f98b76c363db478bb
author kyost
date Sat, 28 Apr 2018 15:07:26 -0400
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#!/bin/bash

input1=$1
output1=$2

echo $input1 |tr , '\n' > input_series

cat input_series | while read file
do
	cat $file >> count_list
done

sort -k1 count_list > sorted_list
cut -f 2 sorted_list > $output1

rm input_series
rm count_list
rm sorted_list