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author lain
date Tue, 19 Jul 2022 07:36:57 +0000
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1 <tool
2 id="history_metadata_extractor"
3 name="History Metadata Extractor"
4 version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"
5 profile="21.09"
6 >
7 <description>
8 displays information from exported history's jobs_attrs.txt file.
9 </description>
10 <macros>
11 <token name="@TOOL_VERSION@">1.0.0</token>
12 <token name="@VERSION_SUFFIX@">0</token>
13 </macros>
14 <requirements>
15 <requirement type="package" version="3.10.5">python</requirement>
16 </requirements>
17 <stdio>
18 <exit_code range="1" level="fatal" description="Missing parameter error" />
19 <exit_code range="2" level="fatal" description="Bad parameter's value" />
20 <exit_code range="3" level="fatal" description="Missing input file" />
21 <exit_code range="4:254" level="fatal" description="Unknown error" />
22 <exit_code range="255" level="fatal" description="No any result to output" />
23 </stdio>
24 <version_command>
25 python3 '$__tool_directory__/history_metadata_extractor.py' --version | head -n 1
26 </version_command>
27 <command>
28 <![CDATA[
29 python3 '$__tool_directory__/history_metadata_extractor.py'
30 --jobs-attrs '$jobs_attrs'
31 --dataset-attrs '$dataset_attrs'
32 --output '$history_visu'
33 ]]>
34 </command>
35 <inputs>
36 <param
37 argument="--jobs-attrs"
38 type="data"
39 format="txt"
40 label="Exported history's jobs_attrs.txt file"
41 help="Export and extract an history. Select the file 'jobs_attrs.txt'"
42 />
43 <param
44 argument="--dataset-attrs"
45 type="data"
46 format="txt"
47 label="Exported history's dataset_attrs.txt file"
48 help="Export and extract an history. Select the file 'dataset_attrs.txt'"
49 />
50 </inputs>
51 <outputs>
52 <data
53 name="history_visu"
54 format="html"
55 label="history_visu.html"
56 />
57 </outputs>
58 <tests>
59 <test>
60 <param name="jobs_attrs" value="jobs_attrs.txt" />
61 <param name="dataset_attrs" value="datasets_attrs.txt" />
62 <output name="history_visu" file="out.html" />
63 </test>
64 </tests>
65 <help><![CDATA[
66 .. class:: infomark
67
68 **Authors** Lain Pavot
69
70 .. class:: infomark
71
72 ---------------------------------------------------
73
74
75
76
77 History Metadata Extractor
78
79 Extracts informations from the `jobs_attrs.txt` file in exported histories,
80 and produces an html page showing these informations in a kawaii table.
81
82
83
84 Metadata
85
86 * **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr
87 * **@CREATION DATE**: 22/06/2022
88 * **@DATE**: 22/06/2022
89 * **@VERSION**: 0.1.0
90
91
92
93
94 ]]>
95 </help>
96 </tool>