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1 <tool
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2 id="history_metadata_extractor"
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3 name="History Metadata Extractor"
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4 version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"
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5 profile="21.09"
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6 >
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7 <description>
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8 displays information from exported history's jobs_attrs.txt file.
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9 </description>
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10 <macros>
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11 <token name="@TOOL_VERSION@">1.0.0</token>
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12 <token name="@VERSION_SUFFIX@">0</token>
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13 </macros>
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14 <requirements>
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15 <requirement type="package" version="3.10.5">python</requirement>
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16 </requirements>
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17 <stdio>
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18 <exit_code range="1" level="fatal" description="Missing parameter error" />
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19 <exit_code range="2" level="fatal" description="Bad parameter's value" />
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20 <exit_code range="3" level="fatal" description="Missing input file" />
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21 <exit_code range="4:254" level="fatal" description="Unknown error" />
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22 <exit_code range="255" level="fatal" description="No any result to output" />
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23 </stdio>
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24 <version_command>
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25 python3 '$__tool_directory__/history_metadata_extractor.py' --version | head -n 1
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26 </version_command>
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27 <command>
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28 <![CDATA[
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29 python3 '$__tool_directory__/history_metadata_extractor.py'
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30 --jobs-attrs '$jobs_attrs'
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31 --dataset-attrs '$dataset_attrs'
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32 --output '$history_visu'
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33 ]]>
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34 </command>
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35 <inputs>
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36 <param
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37 argument="--jobs-attrs"
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38 type="data"
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39 format="txt"
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40 label="Exported history's jobs_attrs.txt file"
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41 help="Export and extract an history. Select the file 'jobs_attrs.txt'"
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42 />
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43 <param
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44 argument="--dataset-attrs"
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45 type="data"
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46 format="txt"
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47 label="Exported history's dataset_attrs.txt file"
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48 help="Export and extract an history. Select the file 'dataset_attrs.txt'"
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49 />
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50 </inputs>
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51 <outputs>
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52 <data
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53 name="history_visu"
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54 format="html"
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55 label="history_visu.html"
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56 />
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57 </outputs>
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58 <tests>
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59 <test>
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60 <param name="jobs_attrs" value="jobs_attrs.txt" />
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61 <param name="dataset_attrs" value="datasets_attrs.txt" />
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62 <output name="history_visu" file="out.html" />
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63 </test>
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64 </tests>
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65 <help><![CDATA[
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66 .. class:: infomark
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67
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68 **Authors** Lain Pavot
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69
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70 .. class:: infomark
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71
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72 ---------------------------------------------------
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73
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74
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75
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76
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77 History Metadata Extractor
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78
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79 Extracts informations from the `jobs_attrs.txt` file in exported histories,
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80 and produces an html page showing these informations in a kawaii table.
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81
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82
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83
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84 Metadata
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85
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86 * **@AUTHOR**: Lain Pavot - lain.pavot@inrae.fr
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87 * **@CREATION DATE**: 22/06/2022
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88 * **@DATE**: 22/06/2022
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89 * **@VERSION**: 0.1.0
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90
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91
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92
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93
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94 ]]>
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95 </help>
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96 </tool>
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