Mercurial > repos > lparsons > ea_utils
view tool_dependencies.xml @ 0:e6f1c31279db draft
Initial version with fastq-join
author | Lance Parsons <lparsons@princeton.edu> |
---|---|
date | Thu, 20 Sep 2012 18:59:38 -0400 |
parents | |
children |
line wrap: on
line source
<?xml version="1.0"?> <tool_dependency> <package name="ea-utils" version="1.1.2-469"> <install version="1.0"> <actions> <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-469.tar.gz</action> <!-- sam-stats and varcall require an extra Bamtools library and we don't need them, so skip --> <action type="shell_command">sed -i.bak 's/sam-stats varcall$//' Makefile</action> <action type="shell_command">PREFIX=$INSTALL_DIR make install</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> </readme> </package> </tool_dependency>