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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [Get Data]-->
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4 <tool id="ExtractProteinSequence" name="ExtractProteinSequence" version="1.1.0">
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5 <description>extracts fasta sequence</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">ExtractProteinSequence</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="stdio"/>
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11 <expand macro="requirements"/>
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12 <command>ExtractProteinSequence
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13
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14 #if $param_i:
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15 -i $param_i
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16 #end if
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17 #if $param_o:
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18 -o $param_o
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19 #end if
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20 #if $param_c:
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21 -c "$param_c"
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22 #end if
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23 </command>
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24 <inputs>
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25 <param name="param_i" type="data" format="pdb" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="input pdb file from which to extract" help="(-i) "/>
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26 <param name="param_c" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="chain specifie" help="(-c) ">
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27 <sanitizer>
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28 <valid initial="string.printable">
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29 <remove value="'"/>
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30 <remove value="""/>
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31 </valid>
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32 </sanitizer>
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33 </param>
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34 </inputs>
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35 <expand macro="advanced_options"/>
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36 <outputs>
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37 <data name="param_o" format="fasta"/>
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38 </outputs>
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39 <help>This tool extracts the fasta sequence from a given pdb file.
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40
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41 </help>
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42 </tool>
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