<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Get Data]-->
<tool id="ExtractProteinSequence" name="ExtractProteinSequence" version="1.1.0">
  <description>extracts fasta sequence</description>
  <macros>
    <token name="@EXECUTABLE@">ExtractProteinSequence</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>ExtractProteinSequence

#if $param_i:
  -i $param_i
#end if
#if $param_o:
  -o $param_o
#end if
#if $param_c:
  -c     "$param_c"
#end if
</command>
  <inputs>
    <param name="param_i" type="data" format="pdb" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input pdb file from which to extract" help="(-i) "/>
    <param name="param_c" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="chain specifie" help="(-c) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
  </inputs>
  <expand macro="advanced_options"/>
  <outputs>
    <data name="param_o" format="fasta"/>
  </outputs>
  <help>This tool extracts the fasta sequence from a given pdb file.

</help>
</tool>