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comparison galaxy_stubs/ExtractProteinSequence.xml @ 2:605370bc1def draft default tip

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author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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1:31013b5cd066 2:605370bc1def
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Get Data]-->
4 <tool id="ExtractProteinSequence" name="ExtractProteinSequence" version="1.1.0">
5 <description>extracts fasta sequence</description>
6 <macros>
7 <token name="@EXECUTABLE@">ExtractProteinSequence</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="stdio"/>
11 <expand macro="requirements"/>
12 <command>ExtractProteinSequence
13
14 #if $param_i:
15 -i $param_i
16 #end if
17 #if $param_o:
18 -o $param_o
19 #end if
20 #if $param_c:
21 -c "$param_c"
22 #end if
23 </command>
24 <inputs>
25 <param name="param_i" type="data" format="pdb" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input pdb file from which to extract" help="(-i) "/>
26 <param name="param_c" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="chain specifie" help="(-c) ">
27 <sanitizer>
28 <valid initial="string.printable">
29 <remove value="'"/>
30 <remove value="&quot;"/>
31 </valid>
32 </sanitizer>
33 </param>
34 </inputs>
35 <expand macro="advanced_options"/>
36 <outputs>
37 <data name="param_o" format="fasta"/>
38 </outputs>
39 <help>This tool extracts the fasta sequence from a given pdb file.
40
41 </help>
42 </tool>