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annotate ribopicker.sh @ 0:75ca0166e969 draft

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author malex
date Tue, 16 Oct 2012 19:42:32 -0400
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1 #!/bin/bash
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2 # Ribopicker Galaxy Wrapper
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3 # Version: 1.0
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4 # Oleksandr Moskalenko <om@hpc.ufl.edu> (2012)
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5
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6 # set -e
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7
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8 fail()
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9 {
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10 echo "$@" >&2
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11 exit 1
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12 }
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13
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14 ribopicker_galaxy.pl $@ || fail "Could not run RiboPicker"
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15 sleep 1
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16 ln -s galaxy_rrna.fa galaxy_rrna.txt
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17 ln -s galaxy_nonrrna.fa galaxy_nonrrna.txt