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annotate CADDSuite-1.5/galaxyconfigs/tools/PDBDownload.xml @ 7:bfab27640f5e draft

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CADDSuite version 1.5
author Marcel Schumann <schumann.marcel@gmail.com>
date Tue, 24 Jul 2012 11:13:59 -0400
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2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
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3 <tool id="pdbdownload" name="PDBDownload" version="1.5">
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4 <description>retrieve pdb-file from pdb.org</description>
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5 <command interpreter="bash"><![CDATA[../../PDBDownload
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6 #if str( $id ) != '' and str( $id ) != 'None' :
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7 -id "$id"
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8 #end if
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9 #if str( $o ) != '' and str( $o ) != 'None' :
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10 -o "$o"
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11 #end if
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12 #if str( $p ) != '' and str( $p ) != 'None' :
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13 -p "$p"
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14 #end if
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15 | tail -n 5
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16 ]]></command>
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17 <inputs>
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18 <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/>
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19 <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/>
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20 </inputs>
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21 <outputs>
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22 <data name="o" format="pdb"/>
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23 </outputs>
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24 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help>
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25 </tool>