Mercurial > repos > matt-shirley > sra_tools
view sra_fetch.xml @ 0:cdcc400dcafc draft
Migrated separate tools fastq_dump, sam_dump, and sra_fetch to this repository for further development.
author | matt-shirley <mdshw5@gmail.com> |
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date | Tue, 27 Nov 2012 13:31:09 -0500 |
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<tool id="sra_fetch" name="Fetch SRA" version="1.0.0"> <description> by accession from NCBI SRA.</description> <command interpreter="python">sra_fetch.py '$accession' '$output'</command> <inputs> <param name="accession" size="13" type="text" value="SRR000001" label="SRA run accession"/> </inputs> <outputs> <data format="sra" name="output" label="Fetch ${accession.value}"/> </outputs> <requirements> <requirement type="python">sra_fetch.py</requirement> </requirements> <help> This tool fetches SRA archives from NCBI over FTP using the python ftplib. </help> </tool>