--- a/rapsodyn/CreateMatrix.xml	Mon Jan 19 10:38:29 2015 -0500
+++ b/rapsodyn/CreateMatrix.xml	Mon Jan 26 18:10:52 2015 -0500
@@ -1,11 +1,11 @@
 <tool id="CreateMatrix" name="CreateMatrix" version="1.00">
 <description>Create Genotyping Matrix</description>
 <command interpreter="perl">
-	CreateMatrix.pl -input_pileup_file $input_pileup_file -input_variant_file $input_variant_file -input_variant_unique_file $input_variant_unique_file > $output_file 
+	CreateMatrix.pl -input_name $input_name -input_pileup_file $input_pileup_file -input_variant_unique_file $input_variant_unique_file > $output_file 
 </command>
 <inputs>
+	<param name="input_name" size="30" type="text" label="Genotype name"/>
 	<param name="input_pileup_file"  type="data" format="pileup" label="Select suitable PILEUP files from your history"/>
-	<param name="input_variant_file"  type="data" format="pileup" label="Select suitable VARIANT files from your history"/>
 	<param name="input_variant_unique_file"  type="data" format="pileup" label="Select suitable VARIANT UNIQUE files from your history"/>
 	
 </inputs>