Mercurial > repos > melpetera > generic_filter
comparison GalFilter/test-generic_filter.sh @ 3:cfd7c4aa5c26 draft default tip
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| author | melpetera |
|---|---|
| date | Fri, 03 Jan 2020 04:09:28 -0500 |
| parents | |
| children |
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| 2:12cf1eed21f4 | 3:cfd7c4aa5c26 |
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| 1 #!/bin/bash | |
| 2 | |
| 3 # set path | |
| 4 scriptdir=$(cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd) | |
| 5 | |
| 6 # run test | |
| 7 Rscript $scriptdir/filter_wrap.R dataMatrix_in "$scriptdir/test-data/in_DM1.tabular" sampleMetadata_in "$scriptdir/test-data/in_SM1.tabular" variableMetadata_in "$scriptdir/test-data/in_VM1.tabular" Numeric "TRUE" num_file "variable" parm_col "rt" Interval "lower" low_value "1.2" Factors "TRUE" qual_file "sample" factor_col "Time" factors_value "3" dataMatrix_out "$scriptdir/out_DM1.tabular" sampleMetadata_out "$scriptdir/out_SM1.tabular" variableMetadata_out "$scriptdir/out_VM1.tabular" | |
| 8 | |
| 9 # test diff | |
| 10 diff $scriptdir/out_DM1.tabular $scriptdir/test-data/out_DM1.tabular || exit 2 | |
| 11 diff $scriptdir/out_SM1.tabular $scriptdir/test-data/out_SM1.tabular || exit 2 | |
| 12 diff $scriptdir/out_VM1.tabular $scriptdir/test-data/out_VM1.tabular || exit 2 |