Mercurial > repos > melpetera > generic_filter

annotate GalFilter/test-generic_filter.sh @ 3:cfd7c4aa5c26 draft default tip

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author melpetera
date Fri, 03 Jan 2020 04:09:28 -0500
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1 #!/bin/bash
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2
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3 # set path
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4 scriptdir=$(cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd)
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5
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6 # run test
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7 Rscript $scriptdir/filter_wrap.R dataMatrix_in "$scriptdir/test-data/in_DM1.tabular" sampleMetadata_in "$scriptdir/test-data/in_SM1.tabular" variableMetadata_in "$scriptdir/test-data/in_VM1.tabular" Numeric "TRUE" num_file "variable" parm_col "rt" Interval "lower" low_value "1.2" Factors "TRUE" qual_file "sample" factor_col "Time" factors_value "3" dataMatrix_out "$scriptdir/out_DM1.tabular" sampleMetadata_out "$scriptdir/out_SM1.tabular" variableMetadata_out "$scriptdir/out_VM1.tabular"
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8
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9 # test diff
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10 diff $scriptdir/out_DM1.tabular $scriptdir/test-data/out_DM1.tabular || exit 2
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11 diff $scriptdir/out_SM1.tabular $scriptdir/test-data/out_SM1.tabular || exit 2
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12 diff $scriptdir/out_VM1.tabular $scriptdir/test-data/out_VM1.tabular || exit 2