--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GalFilter/test-generic_filter.sh	Fri Jan 03 04:09:28 2020 -0500
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+# set path
+scriptdir=$(cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd)
+
+# run test
+Rscript $scriptdir/filter_wrap.R dataMatrix_in "$scriptdir/test-data/in_DM1.tabular" sampleMetadata_in "$scriptdir/test-data/in_SM1.tabular" variableMetadata_in "$scriptdir/test-data/in_VM1.tabular" Numeric "TRUE" num_file "variable" parm_col "rt" Interval "lower" low_value "1.2" Factors "TRUE" qual_file "sample" factor_col "Time" factors_value "3" dataMatrix_out "$scriptdir/out_DM1.tabular" sampleMetadata_out "$scriptdir/out_SM1.tabular" variableMetadata_out "$scriptdir/out_VM1.tabular"
+
+# test diff
+diff $scriptdir/out_DM1.tabular $scriptdir/test-data/out_DM1.tabular || exit 2
+diff $scriptdir/out_SM1.tabular $scriptdir/test-data/out_SM1.tabular || exit 2
+diff $scriptdir/out_VM1.tabular $scriptdir/test-data/out_VM1.tabular || exit 2
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