annotate tools/met4j.yml @ 8:1274e2a62479 draft default tip

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
author metexplore
date Wed, 26 Jul 2023 15:33:45 +0000
parents 1436e9cde9c9
children
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9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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1 ---
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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2 install_repository_dependencies: true
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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3 install_resolver_dependencies: true
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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4 install_tool_dependencies: false
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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5 tools:
3
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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6 - name: DecomposeSBML
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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7 owner: metexplore
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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8 tool_panel_section_id: met4j_attributes
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9 - name: ExtractPathways
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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10 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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11 tool_panel_section_id: met4j_attributes
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12 - name: ExtractSbmlAnnot
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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13 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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14 tool_panel_section_id: met4j_attributes
3
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15 - name: GetGenesFromReactions
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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16 owner: metexplore
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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17 tool_panel_section_id: met4j_attributes
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18 - name: GetReactantsFromReactions
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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19 owner: metexplore
6bd9aad9626d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414
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20 tool_panel_section_id: met4j_attributes
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21 - name: SbmlSetChargesFromFile
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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22 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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23 tool_panel_section_id: met4j_attributes
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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24 - name: SbmlSetEcsFromFile
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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25 owner: metexplore
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26 tool_panel_section_id: met4j_attributes
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27 - name: SbmlSetFormulasFromFile
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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28 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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29 tool_panel_section_id: met4j_attributes
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30 - name: SbmlSetGprsFromFile
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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31 owner: metexplore
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32 tool_panel_section_id: met4j_attributes
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33 - name: SbmlSetIdsFromFile
ae4c301919c4 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 2af2c8a0ca9665e1117bb7810bffc105ed39c4f5
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34 owner: metexplore
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35 tool_panel_section_id: met4j_attributes
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36 - name: SbmlSetNamesFromFile
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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37 owner: metexplore
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38 tool_panel_section_id: met4j_attributes
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39 - name: SbmlSetPathwaysFromFile
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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40 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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41 tool_panel_section_id: met4j_attributes
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42 - name: SbmlSetRefsFromFile
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43 owner: metexplore
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44 tool_panel_section_id: met4j_attributes
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45 - name: SbmlToMetaboliteTable
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46 owner: metexplore
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47 tool_panel_section_id: met4j_attributes
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48 - name: GetModelProteome
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49 owner: metexplore
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50 tool_panel_section_id: met4j_bigg
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51 - name: FbcToNotes
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52 owner: metexplore
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53 tool_panel_section_id: met4j_convert
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54 - name: Kegg2Sbml
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55 owner: metexplore
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56 tool_panel_section_id: met4j_convert
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57 - name: SBMLwizard
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58 owner: metexplore
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59 tool_panel_section_id: met4j_convert
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60 - name: Sbml2Graph
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61 owner: metexplore
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62 tool_panel_section_id: met4j_convert
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63 - name: Sbml2Tab
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64 owner: metexplore
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65 tool_panel_section_id: met4j_convert
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66 - name: Tab2Sbml
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67 owner: metexplore
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68 tool_panel_section_id: met4j_convert
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69 - name: NameMatcher
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70 owner: metexplore
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71 tool_panel_section_id: met4j_mapping
8
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72 - name: ORApathwayEnrichment
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73 owner: metexplore
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74 tool_panel_section_id: met4j_mapping
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75 - name: BipartiteDistanceMatrix
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76 owner: metexplore
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77 tool_panel_section_id: met4j_networkanalysis
1
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78 - name: CarbonSkeletonNet
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79 owner: metexplore
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80 tool_panel_section_id: met4j_networkanalysis
4
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81 - name: ChemSimilarityWeighting
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82 owner: metexplore
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83 tool_panel_section_id: met4j_networkanalysis
1
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84 - name: ChokePoint
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85 owner: metexplore
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86 tool_panel_section_id: met4j_networkanalysis
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87 - name: CompoundNet
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88 owner: metexplore
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89 tool_panel_section_id: met4j_networkanalysis
4
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90 - name: DegreeWeighting
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91 owner: metexplore
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92 tool_panel_section_id: met4j_networkanalysis
1
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93 - name: DistanceMatrix
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94 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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95 tool_panel_section_id: met4j_networkanalysis
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
metexplore
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96 - name: ExtractSubBipNetwork
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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97 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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98 tool_panel_section_id: met4j_networkanalysis
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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99 - name: ExtractSubNetwork
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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100 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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101 tool_panel_section_id: met4j_networkanalysis
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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102 - name: ExtractSubReactionNetwork
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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103 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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104 tool_panel_section_id: met4j_networkanalysis
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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105 - name: LoadPoint
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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106 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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107 tool_panel_section_id: met4j_networkanalysis
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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108 - name: MetaboRank
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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109 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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110 tool_panel_section_id: met4j_networkanalysis
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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111 - name: NetworkSummary
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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112 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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113 tool_panel_section_id: met4j_networkanalysis
6
7a6f2380fc1d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
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114 - name: PathwayNet
7a6f2380fc1d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
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115 owner: metexplore
7a6f2380fc1d planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
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116 tool_panel_section_id: met4j_networkanalysis
1
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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117 - name: PrecursorNetwork
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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118 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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119 tool_panel_section_id: met4j_networkanalysis
8
1274e2a62479 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
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120 - name: ReactionDistanceMatrix
1274e2a62479 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
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121 owner: metexplore
1274e2a62479 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
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122 tool_panel_section_id: met4j_networkanalysis
1
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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123 - name: ScopeNetwork
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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124 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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125 tool_panel_section_id: met4j_networkanalysis
4
ae4c301919c4 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 2af2c8a0ca9665e1117bb7810bffc105ed39c4f5
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126 - name: SeedsAndTargets
ae4c301919c4 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 2af2c8a0ca9665e1117bb7810bffc105ed39c4f5
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127 owner: metexplore
ae4c301919c4 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 2af2c8a0ca9665e1117bb7810bffc105ed39c4f5
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128 tool_panel_section_id: met4j_networkanalysis
1
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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129 - name: SideCompoundsScan
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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130 owner: metexplore
9b162ee6ff8e planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
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131 tool_panel_section_id: met4j_networkanalysis
8
1274e2a62479 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
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132 - name: TopologicalPathwayAnalysis
1274e2a62479 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
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133 owner: metexplore
1274e2a62479 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
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134 tool_panel_section_id: met4j_networkanalysis
5
35c9abcd8934 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 8577c4cd3ad279c5e97f48f822e041c6b0d90598
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135 - name: SbmlCheckBalance
35c9abcd8934 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 8577c4cd3ad279c5e97f48f822e041c6b0d90598
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136 owner: metexplore
35c9abcd8934 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 8577c4cd3ad279c5e97f48f822e041c6b0d90598
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137 tool_panel_section_id: met4j_reconstruction