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comparison tools/tool_conf.xml @ 1:9b162ee6ff8e draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author metexplore
date Mon, 27 Jun 2022 13:41:08 +0000
parents dcd16521b969
children 6bd9aad9626d
comparison
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0:dcd16521b969 1:9b162ee6ff8e
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <toolbox monitor="true"> 2 <toolbox monitor="true">
3 <section id="met4j" name="met4j apps"> 3 <label id="met4j" text="MET4J"/>
4 <label id="attributes" text="met4j attributes" version=""/> 4 <section id="met4j_attributes" name="Met4J - attributes"/>
5 <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/> 5 <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/>
6 <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/> 6 <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/>
7 <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/> 7 <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/>
8 <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/> 8 <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/>
9 <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/> 9 <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>
10 <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/> 10 <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/>
11 <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/> 11 <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/>
12 <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/> 12 <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/>
13 <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/> 13 <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/>
14 <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/> 14 <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/>
15 <label id="bigg" text="met4j bigg" version=""/> 15 <section id="met4j_bigg" name="Met4J - bigg"/>
16 <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/> 16 <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/>
17 <label id="convert" text="met4j convert" version=""/> 17 <section id="met4j_convert" name="Met4J - convert"/>
18 <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/> 18 <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/>
19 <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/> 19 <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/>
20 <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/> 20 <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/>
21 <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/> 21 <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/>
22 <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/> 22 <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/>
23 <label id="networkAnalysis" text="met4j networkAnalysis" version=""/> 23 <section id="met4j_networkanalysis" name="Met4J - networkAnalysis"/>
24 <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/> 24 <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/>
25 <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/> 25 <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/>
26 <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/> 26 <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/>
27 <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/> 27 <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/>
28 <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/> 28 <tool file="met4j/networkAnalysis/ExtractSubBipNetwork/ExtractSubBipNetwork.xml"/>
29 <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/> 29 <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/>
30 <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/> 30 <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/>
31 <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/> 31 <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/>
32 <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/> 32 <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/>
33 <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/> 33 <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/>
34 <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/> 34 <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/>
35 <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/> 35 <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/>
36 </section> 36 <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/>
37 </toolbox> 37 </toolbox>