Mercurial > repos > metexplore > met4j

diff tools/tool_conf.xml @ 1:9b162ee6ff8e draft

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planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 12798951d21c3b2b13514b38148b2848cb422c95
author metexplore
date Mon, 27 Jun 2022 13:41:08 +0000
parents dcd16521b969
children 6bd9aad9626d
line wrap: on
line diff
--- a/tools/tool_conf.xml	Fri Jun 10 10:31:34 2022 +0000
+++ b/tools/tool_conf.xml	Mon Jun 27 13:41:08 2022 +0000
@@ -1,37 +1,37 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <toolbox monitor="true">
-  <section id="met4j" name="met4j apps">
-    <label id="attributes" text="met4j attributes" version=""/>
-    <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/>
-    <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/>
-    <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/>
-    <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/>
-    <label id="bigg" text="met4j bigg" version=""/>
-    <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/>
-    <label id="convert" text="met4j convert" version=""/>
-    <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/>
-    <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/>
-    <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/>
-    <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/>
-    <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/>
-    <label id="networkAnalysis" text="met4j networkAnalysis" version=""/>
-    <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/>
-    <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/>
-    <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/>
-    <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/>
-    <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/>
-    <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/>
-    <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/>
-    <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/>
-    <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/>
-    <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/>
-    <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/>
-    <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/>
-  </section>
+  <label id="met4j" text="MET4J"/>
+  <section id="met4j_attributes" name="Met4J - attributes"/>
+  <tool file="met4j/attributes/ExtractPathways/ExtractPathways.xml"/>
+  <tool file="met4j/attributes/ExtractSbmlAnnot/ExtractSbmlAnnot.xml"/>
+  <tool file="met4j/attributes/SbmlSetChargesFromFile/SbmlSetChargesFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlSetEcsFromFile/SbmlSetEcsFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlSetFormulasFromFile/SbmlSetFormulasFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlSetNamesFromFile/SbmlSetNamesFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlSetRefsFromFile/SbmlSetRefsFromFile.xml"/>
+  <tool file="met4j/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml"/>
+  <section id="met4j_bigg" name="Met4J - bigg"/>
+  <tool file="met4j/bigg/GetModelProteome/GetModelProteome.xml"/>
+  <section id="met4j_convert" name="Met4J - convert"/>
+  <tool file="met4j/convert/FbcToNotes/FbcToNotes.xml"/>
+  <tool file="met4j/convert/Kegg2Sbml/Kegg2Sbml.xml"/>
+  <tool file="met4j/convert/Sbml2Graph/Sbml2Graph.xml"/>
+  <tool file="met4j/convert/Sbml2Tab/Sbml2Tab.xml"/>
+  <tool file="met4j/convert/Tab2Sbml/Tab2Sbml.xml"/>
+  <section id="met4j_networkanalysis" name="Met4J - networkAnalysis"/>
+  <tool file="met4j/networkAnalysis/CarbonSkeletonNet/CarbonSkeletonNet.xml"/>
+  <tool file="met4j/networkAnalysis/ChokePoint/ChokePoint.xml"/>
+  <tool file="met4j/networkAnalysis/CompoundNet/CompoundNet.xml"/>
+  <tool file="met4j/networkAnalysis/DistanceMatrix/DistanceMatrix.xml"/>
+  <tool file="met4j/networkAnalysis/ExtractSubBipNetwork/ExtractSubBipNetwork.xml"/>
+  <tool file="met4j/networkAnalysis/ExtractSubNetwork/ExtractSubNetwork.xml"/>
+  <tool file="met4j/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml"/>
+  <tool file="met4j/networkAnalysis/LoadPoint/LoadPoint.xml"/>
+  <tool file="met4j/networkAnalysis/MetaboRank/MetaboRank.xml"/>
+  <tool file="met4j/networkAnalysis/NetworkSummary/NetworkSummary.xml"/>
+  <tool file="met4j/networkAnalysis/PrecursorNetwork/PrecursorNetwork.xml"/>
+  <tool file="met4j/networkAnalysis/ScopeNetwork/ScopeNetwork.xml"/>
+  <tool file="met4j/networkAnalysis/SideCompoundsScan/SideCompoundsScan.xml"/>
 </toolbox>