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comparison fsd_regions.py @ 8:6c2608e8d094 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_regions commit 8833d1a8a49d7b6d4a9c849b0335d3260564b351-dirty
author mheinzl
date Tue, 20 Nov 2018 09:51:47 -0500
parents 3b8a0e462021
children eabfdc012d7b
comparison
equal deleted inserted replaced
7:3b8a0e462021 8:6c2608e8d094
69 quant_ba = quant[numpy.where(tags == "ba")[0]] 69 quant_ba = quant[numpy.where(tags == "ba")[0]]
70 70
71 seqDic_ab = dict(zip(all_ab, quant_ab)) 71 seqDic_ab = dict(zip(all_ab, quant_ab))
72 seqDic_ba = dict(zip(all_ba, quant_ba)) 72 seqDic_ba = dict(zip(all_ba, quant_ba))
73 73
74 if re.search(r'_(\d)+_(\d)+$', str(mut_array[0,0])) is None: 74 if re.search(r'(\d)+_(\d)+$', str(mut_array[0,0])) is None:
75 seq_mut, seqMut_index = numpy.unique(numpy.array(mut_array[:, 1]), return_index=True) 75 seq_mut, seqMut_index = numpy.unique(numpy.array(mut_array[:, 1]), return_index=True)
76 group = mut_array[seqMut_index,0] 76 group = mut_array[seqMut_index,0]
77 mut_array = mut_array[seqMut_index,:] 77 mut_array = mut_array[seqMut_index,:]
78 length_regions = len(seq_mut)*2 78 length_regions = len(seq_mut)*2
79 79
154 s = 0 154 s = 0
155 index_array = 0 155 index_array = 0
156 for i, count in zip(groupUnique, quantAfterRegion): 156 for i, count in zip(groupUnique, quantAfterRegion):
157 index_of_current_region = numpy.where(group == i)[0] 157 index_of_current_region = numpy.where(group == i)[0]
158 plt.text(0.55, 0.14 - s, "{}=\n".format(i), size=11, transform=plt.gcf().transFigure) 158 plt.text(0.55, 0.14 - s, "{}=\n".format(i), size=11, transform=plt.gcf().transFigure)
159 if re.search(r'_(\d)+_(\d)+$', str(mut_array[0, 0])) is None: 159 if re.search(r'(\d)+_(\d)+$', str(mut_array[0, 0])) is None:
160 nr_tags_ab = len(numpy.unique(mut_array[index_of_current_region, 1])) 160 nr_tags_ab = len(numpy.unique(mut_array[index_of_current_region, 1]))
161 else: 161 else:
162 nr_tags_ab = len(mut_array[index_of_current_region, 1]) 162 nr_tags_ab = len(mut_array[index_of_current_region, 1])
163 plt.text(0.75, 0.14 - s, "{:,}\n".format(nr_tags_ab), size=11, transform=plt.gcf().transFigure) 163 plt.text(0.75, 0.14 - s, "{:,}\n".format(nr_tags_ab), size=11, transform=plt.gcf().transFigure)
164 s = s + 0.02 164 s = s + 0.02