Mercurial > repos > mikel-egana-aranguren > oppl

annotate config_oppl_for_galaxy.sh @ 19:cc270db37d33 draft

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Directories re-arranged
author Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Sat, 06 Oct 2012 21:50:39 +0200
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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1 #!/bin/sh
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3 # Remove Kate backup files
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4 rm *~
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6 # Wrapper does not work
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7 # cp stderr_wrapper.py /home/mikel/galaxy/galaxy-dist/tools/OPPL/
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9 # Local installation
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11 cp oppl.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/
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12 cp inference.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/
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13 cp query.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/
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14 cp oppl_query.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/
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15 cp merge.xml /home/mikel/galaxy/galaxy-dist/tools/OPPL/
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17 cp oppl_galaxy.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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18 cp inference.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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19 cp query.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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20 cp oppl_query.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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21 cp merge.jar /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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23 cp -r FaCT++-linux-v1.5.2 /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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25 cp -r oppl_galaxy_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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26 cp -r inference_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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27 cp -r query_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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28 cp -r oppl_query_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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29 cp -r merge_lib /home/mikel/galaxy/galaxy-dist/tool-data/shared/jars/
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31 # Copy src from Eclipse for release
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33 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OPPLGalaxy.java ./src/
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34 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/GalaxyOWLAPI.java ./src/
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35 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/InferenceGalaxy.java ./src/
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36 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OWLQueryGalaxy.java ./src/
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37 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/fi/dia/oeg/oppl/galaxy/OWLQueryGalaxy.java ./src/
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38 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/cbgp/opplquery/oppl/galaxy/OPPLQueryGalaxy.java ./src/
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39 cp /home/mikel/UPM/Eclipse_Workspace/OPPL_Galaxy/src/es/upm/cbgp/opplquery/oppl/galaxy/MergeImportedOntologies.java ./src/
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41 # Copy files for google code release ('Backup' release, not open to public)
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43 cp *.jar /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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44 cp *.xml /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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45 cp -r *_lib /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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46 cp -r FaCT++-* /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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47 cp -r src /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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48 cp -r test-data /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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49 cp README /home/mikel/UPM/Paper/SWAT4LS_2011/JBS_review/oppl-galaxy.src/
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51 # ##### NOTES
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53 # To kill Galaxy easily: ./run.sh --reload
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55 # Usual mercurial session: update, status, add, commit -m 'Changes', push
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