Mercurial > repos > mingchen0919 > aurora_skewer_site

comparison command-line-arguments.csv @ 0:a42e58c71e5b draft default tip

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 12:55:49 -0500
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comparison
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-1:000000000000 0:a42e58c71e5b
1 short flag,argument mask,data type,variable name
2 o,1,character,report
3 d,1,character,report.files_path
4 A,1,character,first_reads
5 B,1,character,second_reads
6 x,1,character,adapter_first_reads
7 y,1,character,adapter_second_reads
8 m,1,character,trimming_mode
9 r,1,character,maximum_allowed_error_rate
10 D,1,character,maximum_allowed_indel_error_rate
11 q,1,character,quality_trimming_3_end
12 Q,1,character,mean_quality
13 l,1,character,minimum_read_length
14 j,1,character,advanced_options.junction_adapter
15 M,1,character,advanced_options.tab_adapter
16 b,1,character,advanced_options.barcode
17 c,1,character,advanced_options.cut
18 n,1,character,advanced_options.filter_degenerative_reads
19 u,1,character,advanced_options.filter_undetermined_mate_pair_reads
20 f,1,character,advanced_options.format
21 z,1,character,advanced_options.compress
22 E,1,character,advanced_options.qiime
23 F,1,character,advanced_options.quiet
24 i,1,character,advanced_options.intelligent
25 1,1,character,trimmed_r1
26 2,1,character,trimmed_r2
27 3,1,character,trimmed_s