Mercurial > repos > mingchen0919 > aurora_skewer_site

annotate command-line-arguments.csv @ 0:a42e58c71e5b draft default tip

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planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
author mingchen0919
date Sun, 30 Dec 2018 12:55:49 -0500
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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1 short flag,argument mask,data type,variable name
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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2 o,1,character,report
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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3 d,1,character,report.files_path
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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4 A,1,character,first_reads
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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5 B,1,character,second_reads
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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6 x,1,character,adapter_first_reads
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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7 y,1,character,adapter_second_reads
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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8 m,1,character,trimming_mode
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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9 r,1,character,maximum_allowed_error_rate
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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10 D,1,character,maximum_allowed_indel_error_rate
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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11 q,1,character,quality_trimming_3_end
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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12 Q,1,character,mean_quality
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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13 l,1,character,minimum_read_length
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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14 j,1,character,advanced_options.junction_adapter
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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15 M,1,character,advanced_options.tab_adapter
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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16 b,1,character,advanced_options.barcode
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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17 c,1,character,advanced_options.cut
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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18 n,1,character,advanced_options.filter_degenerative_reads
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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19 u,1,character,advanced_options.filter_undetermined_mate_pair_reads
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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20 f,1,character,advanced_options.format
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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21 z,1,character,advanced_options.compress
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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22 E,1,character,advanced_options.qiime
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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23 F,1,character,advanced_options.quiet
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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24 i,1,character,advanced_options.intelligent
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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25 1,1,character,trimmed_r1
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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26 2,1,character,trimmed_r2
a42e58c71e5b planemo upload commit 841d8b22bf9f1aaed6bfe8344b60617f45b275b2-dirty
mingchen0919
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27 3,1,character,trimmed_s