Mercurial > repos > mingchen0919 > rmarkdown_collection_builder

diff collection_paired.Rmd @ 6:a0c8b2b25774 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_collection_builder commit 88ca36a41aa577ba888cee39cf81b176bf7e68db
author mingchen0919
date Tue, 26 Sep 2017 13:33:22 -0400
parents
children abf9cbd7578f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/collection_paired.Rmd	Tue Sep 26 13:33:22 2017 -0400
@@ -0,0 +1,29 @@
+---
+title: 'Build collection: a paired datasets'
+output:
+    html_document:
+      number_sections: true
+      toc: true
+      theme: cosmo
+      highlight: tango
+---
+
+```{r setup, include=FALSE, warning=FALSE, message=FALSE}
+knitr::opts_chunk$set(
+  echo = ECHO
+)
+```
+
+# Command line arguments
+
+```{r 'command line arguments'}
+str(opt)
+```
+
+# Rename files
+
+```{r}
+file.copy("FORWARD_INPUT", './OUTPUT_DIR/forward.FORMAT')
+file.copy("REVERSE_INPUT", './OUTPUT_DIR/reverse.FORMAT')
+```
+