changeset 10:c179d081b6ba draft

planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 435b71c148f373d500847b158c1bbdfb2c8c7978-dirty
author mvdbeek
date Thu, 09 Mar 2017 12:25:30 -0500
parents 53b71263e2a2
children 124f7f8ee080
files add_matesequence.xml allow_dovetailing.xml bam_readtagger.xml findcluster.xml update_mapq.xml write_supplementary_fastq.xml
diffstat 6 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/add_matesequence.xml	Wed Mar 08 05:14:25 2017 -0500
+++ b/add_matesequence.xml	Thu Mar 09 12:25:30 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="add_matesequence" name="Add matesequence" version="0.3.5">
+<tool id="add_matesequence" name="Add matesequence" version="0.3.6">
     <description>into tag field</description>
     <requirements>
-        <requirement type="package" version="0.3.5">readtagger</requirement>
+        <requirement type="package" version="0.3.6">readtagger</requirement>
     </requirements>
     <version_command>add_matesequence --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
--- a/allow_dovetailing.xml	Wed Mar 08 05:14:25 2017 -0500
+++ b/allow_dovetailing.xml	Thu Mar 09 12:25:30 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.5">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.6">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.5">readtagger</requirement>
+        <requirement type="package" version="0.3.6">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
--- a/bam_readtagger.xml	Wed Mar 08 05:14:25 2017 -0500
+++ b/bam_readtagger.xml	Thu Mar 09 12:25:30 2017 -0500
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.3.5">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.3.6">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.3.5">readtagger</requirement>
+        <requirement type="package" version="0.3.6">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -a
--- a/findcluster.xml	Wed Mar 08 05:14:25 2017 -0500
+++ b/findcluster.xml	Thu Mar 09 12:25:30 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="findcluster" name="Find clusters of reads" version="0.3.5">
+<tool id="findcluster" name="Find clusters of reads" version="0.3.6">
     <description>in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.5">readtagger</requirement>
+        <requirement type="package" version="0.3.6">readtagger</requirement>
     </requirements>
     <version_command>findcluster --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
--- a/update_mapq.xml	Wed Mar 08 05:14:25 2017 -0500
+++ b/update_mapq.xml	Thu Mar 09 12:25:30 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="update_mapq" name="Update MAPQ score" version="0.3.5">
+<tool id="update_mapq" name="Update MAPQ score" version="0.3.6">
     <description>of supplementary alignments</description>
     <requirements>
-        <requirement type="package" version="0.3.5">readtagger</requirement>
+        <requirement type="package" version="0.3.6">readtagger</requirement>
     </requirements>
     <version_command>update_mapq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
--- a/write_supplementary_fastq.xml	Wed Mar 08 05:14:25 2017 -0500
+++ b/write_supplementary_fastq.xml	Thu Mar 09 12:25:30 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.3.5">
+<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.3.6">
     <description>from SAM/BAM alignment files as FASTQ</description>
     <requirements>
-        <requirement type="package" version="0.3.5">readtagger</requirement>
+        <requirement type="package" version="0.3.6">readtagger</requirement>
     </requirements>
     <version_command>write_supplementary_fastq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[