Mercurial > repos > mvdbeek > docker_scriptrunner

annotate dockerfiles/r-bioperl-python/Dockerfile @ 0:21d312776891 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
author mvdbeek
date Sat, 09 Jul 2016 16:57:13 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
1 # Script runner base image
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
2 #
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
3 # VERSION 0.3
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
4 # This Dockerfile is the base system for executing scripts with the docker scriptrunner.
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
5
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
6 FROM artbio/scriptrunner
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
7
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
8 MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
9
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
10 USER root
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
11 RUN su - galaxy -c 'bash -c ". /home/galaxy/conda/bin/activate default && \
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
12 conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy r-reshape"' && \
21d312776891 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
mvdbeek
parents:
diff changeset
13 chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy