Mercurial > repos > mvdbeek > r_goseq_1_22_0
changeset 5:f9b964d1d386 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
| author | mvdbeek |
|---|---|
| date | Thu, 25 Feb 2016 05:47:38 -0500 |
| parents | a6198fc1116f |
| children | d4b5942ed347 |
| files | get_length_and_gc_content.r |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/get_length_and_gc_content.r Thu Feb 25 05:45:51 2016 -0500 +++ b/get_length_and_gc_content.r Thu Feb 25 05:47:38 2016 -0500 @@ -14,9 +14,9 @@ parser <- OptionParser(usage = "%prog [options] file", option_list=option_list) args = parse_args(parser) -GTFfile = args.gtf -FASTAfile = args.fasta -output = args.output +GTFfile = args$gtf +FASTAfile = args$fasta +output = args$output #Load the annotation and reduce it GTF <- import.gff(GTFfile, format="gtf", genome=NA, asRangedData=F, feature.type="exon")