Mercurial > repos > nick > allele_counts

diff tests/real.csv.out @ 8:411adeff1eec draft

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Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children 6cc488e11544
line wrap: on
line diff
--- a/tests/real.csv.out	Wed Dec 09 11:37:02 2015 -0500
+++ b/tests/real.csv.out	Tue Aug 23 02:30:56 2016 -0400
@@ -1,11 +1,11 @@
-THYROID	chr1	246704250	29	0	0	0	29	1	A	.	0.0
-THYROID	chr1	246704257	0	0	0	71	71	1	T	.	0.0
-THYROID	chr1	246704268	104	0	0	0	104	1	A	.	0.0
-THYROID	chr1	246704269	0	0	0	105	105	1	T	.	0.0
-THYROID	chr1	246704363	0	72	3	0	75	0	C	G	0.04
-THYROID	chr1	246704437	5	130	0	0	135	0	C	A	0.03704
-THYROID	chr1	246707878	0	0	131	0	131	1	G	.	0.0
-THYROID	chr1	246714587	30	0	43	0	73	2	G	A	0.41096
-THYROID	chr1	246729216	1	0	1	90	92	0	T	G	0.01087
-THYROID	chr7	91502881	0	0	0	26	26	1	T	.	0.0
-THYROID	chr7	91502897	7	36	0	0	43	0	C	A	0.16279
+THYROID	chr1	246704250	29	0	0	0	29	1	A	.	0.0	.
+THYROID	chr1	246704257	0	0	0	71	71	1	T	.	0.0	.
+THYROID	chr1	246704268	104	0	0	0	104	1	A	.	0.0	.
+THYROID	chr1	246704269	0	0	0	105	105	1	T	.	0.0	.
+THYROID	chr1	246704363	0	72	3	0	75	0	C	G	0.04	1.36364
+THYROID	chr1	246704437	5	130	0	0	135	0	C	A	0.03704	2.14286
+THYROID	chr1	246707878	0	0	131	0	131	1	G	.	0.0	.
+THYROID	chr1	246714587	30	0	43	0	73	2	G	A	0.41096	1.22996
+THYROID	chr1	246729216	1	0	1	90	92	0	T	G	0.01087	9.1
+THYROID	chr7	91502881	0	0	0	26	26	1	T	.	0.0	.
+THYROID	chr7	91502897	7	36	0	0	43	0	C	A	0.16279	1.79167