Mercurial > repos > nicolas > oghma
annotate beagle_phase.xml @ 71:37d3d073b51d draft
Uploaded
| author | nicolas |
|---|---|
| date | Fri, 28 Oct 2016 08:44:42 -0400 |
| parents | 1efd84f03444 |
| children |
| rev | line source |
|---|---|
| 21 | 1 <tool id="Beagle_phase" name="Beagle_phase" > |
| 2 <description> beagle as a phasing tools</description> | |
| 3 <command interpreter="bash">beagle_phase.sh $vcf_input </command> | |
| 4 <inputs> | |
| 5 <param format="vcf" name="vcf_input" type="data" label="VCF file to phase"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="vcf" name="vcf_ouput" label="Phased VCF" from_work_dir="out_phased.vcf.gz"/> | |
| 9 <data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/> | |
| 10 </outputs> | |
| 11 | |
| 12 </tool> |