annotate beagle_phase.sh @ 101:edced3c17e3b draft

Deleted selected files
author nicolas
date Mon, 31 Oct 2016 07:20:20 -0400
parents 10afd4b2847b
children
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1 #!/bin/bash
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3 # variable affectation
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4 vcf_input=$1
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5 out="out_phased"
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7 # create temporary directory
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8 directory=`dirname $0`
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9 mkdir tmpdir$$
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10 cp -rf $vcf_input tmpdir$$/input.vcf
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11 # launch beagle
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12 java -jar $directory/beagle.jar gt=$vcf_input out=$out
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13 # remove temporary directory
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14 rm -rf tmpdir$$