Mercurial > repos > ning > ebseq
changeset 22:b2462f571961 draft
Uploaded
| author | ning |
|---|---|
| date | Wed, 20 Mar 2013 00:08:06 -0400 |
| parents | 72d5e182774f |
| children | 675d21e7fabc |
| files | EBIsoformTwoCondTest.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/EBIsoformTwoCondTest.xml Wed Mar 20 00:07:55 2013 -0400 +++ b/EBIsoformTwoCondTest.xml Wed Mar 20 00:08:06 2013 -0400 @@ -2,14 +2,14 @@ <description>Runs EBSeq to find DE isoforms across two conditions</description> <command>R --quiet --slave --file=$GALAXY_ROOT_DIR/tools/EBSeq/EBIsoformTwoCondTest.R --args $Isoform_Expression $First_Row_Sample_Names $Conditions $Ig_Vector $Target_FDR $Output $Sorted_Output $Sorted_Outpu_with_target_FDR $Sizes</command> <inputs> - <param name="Isoform_Expression" type="data" format="tabular" label="Isoform Expression (tab eliminated, please use the unnormalized values)"/> + <param name="Isoform_Expression" type="data" format="tabular" label="Isoform Expression (tab delimited, please use the unnormalized values, e.g. expected counts form RSEM)"/> <param name="First_Row_Sample_Names" type="select" format="text"> <label>The First Row is Sample Names?</label> <option value="y">Yes</option> <option value="n">No</option> </param> <param name="Conditions" type="text" size="60" value="C1,C2" label="Enter which condition each - sample belongs to (seperated by comma, no space please)." + sample belongs to (separated by comma, no space please)." help=""/> <param name="Ig_Vector" type="data" format="tabular" label="Ig Vector to define the uncertainty groups"/> <param name="Target_FDR" type="text" format="tabular" value="0.05" label="Target FDR"