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planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
author nml
date Wed, 08 Nov 2017 16:38:50 -0500
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1 <tool id="combine_stats" name="Combine AssemblyStats" version="1.0">
2 <description>Combines List Collection Assembly Statistics </description>
3 <requirements>
4 <requirement type="package" version="2.49">perl-getopt-long</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 perl '$__tool_directory__/combine_stats.pl'
8
9 --output '$result'
10 #for $f in $texts.keys# --stats '$f=$texts[$f]' #end for#
11 ]]></command>
12 <inputs>
13 <param name="texts" type="data_collection" label="List Collection of Assembly Statistics" help="" optional="false" collection_type="list" />
14 </inputs>
15 <outputs>
16 <data name="result" format="tabular" ></data>
17 </outputs>
18 <tests>
19 <test>
20 <param name="texts">
21 <collection type="list">
22 <element name="first" value="first.txt" />
23 <element name="second" value="second.txt" />
24 </collection>
25 </param>
26 <output name="result" file="results.tabular"/>
27 </test>
28 </tests>
29 <help><![CDATA[
30
31 **What it does**
32
33 Tool will take one or more https://toolshed.g2.bx.psu.edu/view/nml/assemblystats/ results and combine into a single tabular line file where each result is represented by a single line.
34
35 ]]>
36 </help>
37 <citations>
38 <citation type="bibtex">@ARTICLE{a1,
39 title = {Combine AssemblyStats},
40 author = {Mariam Iskander, Philip Mabon},
41 url = {https://github.com/phac-nml/galaxy_tools/}
42 }
43 }</citation>
44 </citations>
45 </tool>