Mercurial > repos > nml > filter_vcf
comparison filtervcf.xml @ 0:93ea196681c8 draft
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author | nml |
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date | Tue, 27 Aug 2019 12:31:30 -0400 |
parents | |
children | 48922d9ca355 |
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1 <tool id="filtervcf" name="Filter vcf" version ="1.8.2"> | |
2 <description>filter out indels and complex SNVS</description> | |
3 <requirements> | |
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | |
5 </requirements> | |
6 <command detect_errors="exit_code"> | |
7 filterVcf.pl --noindels $vcf | |
8 -o $vcfout | |
9 </command> | |
10 <inputs> | |
11 <param name="vcf" type="data" label="VCF file" format="vcf"/> | |
12 </inputs> | |
13 <outputs> | |
14 <data format="vcf" name="vcfout" /> | |
15 </outputs> | |
16 <tests> | |
17 <test> | |
18 <param name="vcf" value="filterVcf.input.1.vcf"/> | |
19 <output name="vcfout" file="filterVcf.output.1.vcf"/> | |
20 </test> | |
21 </tests> | |
22 <help> | |
23 Filter out indels and complex variants from VCF file | |
24 </help> | |
25 <citations> | |
26 </citations> | |
27 </tool> |