comparison filtervcf.xml @ 0:93ea196681c8 draft

"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author nml
date Tue, 27 Aug 2019 12:31:30 -0400
parents
children 48922d9ca355
comparison
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-1:000000000000 0:93ea196681c8
1 <tool id="filtervcf" name="Filter vcf" version ="1.8.2">
2 <description>filter out indels and complex SNVS</description>
3 <requirements>
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement>
5 </requirements>
6 <command detect_errors="exit_code">
7 filterVcf.pl --noindels $vcf
8 -o $vcfout
9 </command>
10 <inputs>
11 <param name="vcf" type="data" label="VCF file" format="vcf"/>
12 </inputs>
13 <outputs>
14 <data format="vcf" name="vcfout" />
15 </outputs>
16 <tests>
17 <test>
18 <param name="vcf" value="filterVcf.input.1.vcf"/>
19 <output name="vcfout" file="filterVcf.output.1.vcf"/>
20 </test>
21 </tests>
22 <help>
23 Filter out indels and complex variants from VCF file
24 </help>
25 <citations>
26 </citations>
27 </tool>