Mercurial > repos > nml > filter_vcf
view filtervcf.xml @ 0:93ea196681c8 draft
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author | nml |
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date | Tue, 27 Aug 2019 12:31:30 -0400 |
parents | |
children | 48922d9ca355 |
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<tool id="filtervcf" name="Filter vcf" version ="1.8.2"> <description>filter out indels and complex SNVS</description> <requirements> <requirement type="package" version="1.8.2">snvphyl-tools</requirement> </requirements> <command detect_errors="exit_code"> filterVcf.pl --noindels $vcf -o $vcfout </command> <inputs> <param name="vcf" type="data" label="VCF file" format="vcf"/> </inputs> <outputs> <data format="vcf" name="vcfout" /> </outputs> <tests> <test> <param name="vcf" value="filterVcf.input.1.vcf"/> <output name="vcfout" file="filterVcf.output.1.vcf"/> </test> </tests> <help> Filter out indels and complex variants from VCF file </help> <citations> </citations> </tool>